Strumelia:
Don't I recall 'something' about the Video module or YT module that we have to do as well? - something to run on your existing videos after doing this 6.1 update? My memory is fuzzy, it was mentioned two or three months ago I believe.
I forgot about this one because I added a link to my tracker in the user menu, sorry.
It was happening because comments were not allowed for the quota. When I enable comments for the quota the profile menu button appears.
For this articular site I'm going to leave comments disabled and use the link to the tracker in the user menu, it's only me adding tracker items anyway.
I generated a full set of icons and uploaded them to the academicskills site which fixed all favicon/touch icon related 404s. You can also define them in the head of your template, but uploading them to the site home directory works as well as long as they are named correctly.
Here is the tool: http://realfavicongenerator.net/
You can run a check on your site, then upload a suitable image and all icons are generated for you.